MEWpy
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BioSystemsUM
Metabolic Engineering Workbench
Hello! I'm trying to build a tissue-specific model using the Gimme algorithm, but the resulting model cannot grow. I was looking at the test of Gimme, and they are incomplete...
Hello @vmspereira, Thanks for creating this tool! I have been able to generate GIMME and E-Flux solutions on my transcriptomic data, but was wondering if there was a way to...
Hello @vvvieira, @jorgemlferreira and the MEWpy team, First, I'd like to express my appreciation for the tool your group has developed for in-silico metabolic modeling and engineering. It appears to...
Hello, I am working with an inhouse kinetic model (SBML format) at ITQB NOVA, and while I can run simulations on MEWpy
When I want to run an enzymatic constraints problem, the program raise: TypeError: Solver.add_constraint() got an unexpected keyword argument 'update'. It focus on: cobra\simulation.py", line 75, in pFBA, solver.add_constraint('obj', objective,...
from mewpy.optimization import EA # import warnings # warnings.filterwarnings("ignore") ea = EA(problem, max_generations= 20) final_pop = ea.run() I optimized the model using the above codes and found that it doesn't...
Hello, I am encountering an issue while running the "rfba.optimize()" & "find_conflicts()" analysis using the provided guide and code. Despite following the instructions exactly, the solution consistently returns an objective...
