BioServices.jl

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Some databases seem to have changed and invalidated some tests, see #44

kescobo

add bioDBnet REST API support

5

# Module to implement bioDBnet REST API access ## Types of changes This PR implements the following changes: * [x] :sparkles: New feature (A non-breaking change which adds functionality). *...

thatRichman

recommended limits on term length?

1

Thanks for this awesome package! Suppose I have 50k IDs to check, how many should I send at a time for queries like: ``` res = esearch(db="gene",term="ENSG00000000003 OR ENSG00000000005 OR...

mkarikom

Efetch

10

The efetch function is giving me errors when I run the following command: where request_str is a array of pmids. EUtils.efetch(db = "pubmed", tool = "BioJulia", retmode = "xml", rettype...

anthonyagudelox3

See here: https://github.com/BioJulia/BioServices.jl/pull/36#issuecomment-814903930 >One last thing is that someone should probably get an account with UMLs and put a token as a secret for UMLS tests to run. If no...

kescobo

https://juliadocs.github.io/Documenter.jl/stable/man/doctests/index.html Would be ideal to avoid issues like #31.

kescobo

## Expected Behavior Handle EUtils HTTP errors gracefully ## Current Behavior Some HTTP errors throw rather cryptic errors. For instance if more NCBI's API frequency is exceeded (3 calls/seconds), we...

mirestrepo