sra-tools repository is missing curl dependency

[nsheff]

fastq-dump requires curl, but the sra-tools container doesn't contain it, so fastq-dump can't run:

The container I'm using is: quay.io/biocontainers/sra-tools:2.10.0--pl526he1b5a44_0

Here's what you get:

docker run --rm --init \
  --workdir="`pwd`" \
  quay.io/biocontainers/sra-tools:2.10.0--pl526he1b5a44_0 fastq-dump SRX5974995

no curl in PATH at /usr/local/bin/fastq-dump line 608.

[osallou]

This is a conda based container, coumd you please an issue at https://github.com/bioconda/bioconda-recipes

Once conda package is fixed, container will be automatically updated with a new fix version

[bgruening]

I guess this is fixed? Please reopen if not. Thanks!

[nsheff]

I believe it was, thanks @bgruening