BhallaLab
AttributeError: module 'rdesigneur' has no attribute 'rdesigneur'
Hello,
Another student is getting this error in her code. We do not know why. The same code is running perfectly fine on my computer. Do you have any suggestions? This error is coming up for all rdesigneur examples.
Hi all,
Could you please expand moose version and how it was installed.
On Wed, Jun 2, 2021 at 3:31 AM ishanseth18 @.***> wrote:
Hello,
Another student is getting this error in her code. We do not know why. The same code is running perfectly fine on my computer. Do you have any suggestions? This error is coming up for all rdesigneur examples.
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I am also getting the same error while attempting to run the example, ex3.1_squid_vclamp.py.
Name: pymoose
Version: 3.1.5
Summary: Python scripting interface of MOOSE Simulator (https://moose.ncbs.res.in)
Home-page: http://moose.ncbs.res.in
Author: MOOSERes
Author-email: [email protected]
License: UNKNOWN
Requires: numpy
PS: Installation method used pip install pymoose.
But could you let us know what is the error?
On Wed, 8 Sep 2021 at 3:30 PM, lungsi @.***> wrote:
I am also getting the same error while attempting to run the example, ex3.1_squid_vclamp.py https://moose.readthedocs.io/en/latest/user/py/rdesigneur/rdes.html#hh-squid-model-with-voltage-clamp .
Name: pymoose Version: 3.1.5 Summary: Python scripting interface of MOOSE Simulator (https://moose.ncbs.res.in) Home-page: http://moose.ncbs.res.in Author: MOOSERes Author-email: @.*** License: UNKNOWN Requires: numpy
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Following import rdesigneur as rd doing this
rdes = rd.rdesigneur(
chanProto = [['make_HH_Na()', 'Na'], ['make_HH_K()', 'K']],
chanDistrib = [
['Na', 'soma', 'Gbar', '1200' ],
['K', 'soma', 'Gbar', '360' ]],
stimList = [['soma', '1', '.', 'vclamp', '-0.065 + (t>0.1 && t<0.2) * 0.02' ]],
plotList = [
['soma', '1', '.', 'Vm', 'Membrane potential'],
['soma', '1', 'vclamp', 'current', 'Soma holding current']
]
)
returns
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-3-b01d0fc1038d> in <module>
----> 1 rdes = rd.rdesigneur(
2 chanProto = [['make_HH_Na()', 'Na'], ['make_HH_K()', 'K']],
3 chanDistrib = [
4 ['Na', 'soma', 'Gbar', '1200' ],
5 ['K', 'soma', 'Gbar', '360' ]],
AttributeError: module 'rdesigneur' has no attribute 'rdesigneur'
I could reproduce the same error when moose installed via pip, with moose version 3.1.5 Will get back on this soon
On Thu, Sep 9, 2021 at 12:51 PM lungsi @.***> wrote:
Doing this
rdes = rd( chanProto = [['make_HH_Na()', 'Na'], ['make_HH_K()', 'K']], chanDistrib = [ ['Na', 'soma', 'Gbar', '1200' ], ['K', 'soma', 'Gbar', '360' ]], stimList = [['soma', '1', '.', 'vclamp', '-0.065 + (t>0.1 && t<0.2) * 0.02' ]], plotList = [ ['soma', '1', '.', 'Vm', 'Membrane potential'], ['soma', '1', 'vclamp', 'current', 'Soma holding current'] ] )
returns
TypeError Traceback (most recent call last)
in ----> 1 rdes = rd( 2 chanProto = [['make_HH_Na()', 'Na'], ['make_HH_K()', 'K']], 3 chanDistrib = [ 4 ['Na', 'soma', 'Gbar', '1200' ], 5 ['K', 'soma', 'Gbar', '360' ]], TypeError: 'module' object is not callable
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The rdesignuer tutorials are improved over the time, run these files getting latest version of pymoose upgrade pre-release version of pymoose using pip install pymoose --pre --upgrade (which would be 3.2.1dev) and run the examples
On Mon, Sep 13, 2021 at 6:34 PM Harsha Rani @.***> wrote:
I could reproduce the same error when moose installed via pip, with moose version 3.1.5 Will get back on this soon
On Thu, Sep 9, 2021 at 12:51 PM lungsi @.***> wrote:
Doing this
rdes = rd( chanProto = [['make_HH_Na()', 'Na'], ['make_HH_K()', 'K']], chanDistrib = [ ['Na', 'soma', 'Gbar', '1200' ], ['K', 'soma', 'Gbar', '360' ]], stimList = [['soma', '1', '.', 'vclamp', '-0.065 + (t>0.1 && t<0.2) * 0.02' ]], plotList = [ ['soma', '1', '.', 'Vm', 'Membrane potential'], ['soma', '1', 'vclamp', 'current', 'Soma holding current'] ] )
returns
TypeError Traceback (most recent call last)
in ----> 1 rdes = rd( 2 chanProto = [['make_HH_Na()', 'Na'], ['make_HH_K()', 'K']], 3 chanDistrib = [ 4 ['Na', 'soma', 'Gbar', '1200' ], 5 ['K', 'soma', 'Gbar', '360' ]], TypeError: 'module' object is not callable
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Sure, let us know if any issue comes up with other examples
Moose team
On Fri, Sep 17, 2021 at 1:09 PM lungsi @.***> wrote:
Thanks @hrani https://github.com/hrani this worked (have not checked with other examples).
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