Benchmark-Models-PEtab icon indicating copy to clipboard operation
Benchmark-Models-PEtab copied to clipboard

Zheng_PNAS2012: measurements matches simulation

Open dilpath opened this issue 2 years ago • 1 comments

Reported by @plakrisenko

The measurements and simulation are almost identical.

Comparing the data [1] and simulation [2] from the original benchmark collection.

  • [1] seems to correspond with the data and simulated data in our PEtab problem
  • [1] contains the same standard deviation values everywhere... probably the estimated sigma in our PEtab problem
  • [2] contains negative values...

[1] https://github.com/Benchmarking-Initiative/Benchmark-Models/blob/master/Benchmark-Models/Zheng_PNAS2012/Data/model1_data1.xlsx [2] https://github.com/Benchmarking-Initiative/Benchmark-Models/blob/master/Benchmark-Models/Zheng_PNAS2012/SimulatedData/model1_data1.xlsx

dilpath avatar Feb 22 '23 05:02 dilpath

Zheng_PNAS2012_simulated_w_nominal_values.csv Also, [2] is different from what I get when simulating with nominal values from parameter table

plakrisenko avatar Feb 24 '23 17:02 plakrisenko