Kevin M. Dean

icon indicating a website link www.dean-lab.org icon indicating an email [email protected]

icon company University of Texas Southwestern Medical Center icon location Dallas, TX. USA. icon location Innovating at the nexus of high-resolution bioimaging and computer vision at UT Southwestern.

Results 53 issues of Kevin M. Dean

Add BDV Metadata for Tiff files.

This should be an easy one. Currently only provide BDV support for HDF5 and N5. See line 158 of `bdv_metadata.py`. Basic information already exists. Just compare with other BDV xml...

Update workflows

2 comment

Scrollable Tabs

Given that we have so many awesome plugins, we may run out of space if people choose to have tabs not popups. Perhaps we could implement something like this for...

enhancement
low priority

Investigating additional stage axes.

3 comment

I'm trying to investigate whether or not we will run into any issues with the multi-position table when additional stage axes are added. After adding a new axis to the...

Update Focus after Autofocus Routine

4 comment

Currently the GUI does not get updated in the Stage Control tab after running the autofocus routine.

Dependency update

1 comment

Provide information on shearing and rotation parameters

We need to provide some documentation on operating the microscope in a non-orthogonal acquisition format, and how we can use shearing to correct for the imaging geometry.

Update Documentation

A variety of tasks that require updating the documentation.

Update Tiger Controller Stage Commands

5 comment

Now retrieve current settings before by default changing them. Goal is to modify settings as little as is possible. And importantly, greatly reduce the maximum speed... @EvoleneP - Please test...

Update Configuration Documentation

Now that we have added the ability to reset the data acquisition card, we should update the documentation. This parameter should also be added to the configurator. ``` To enable...