Compile with shared ITK/VTK to reduce wheel size
Hello - after some old packages were removed from PyPI I did a little digging to see if I could shrink the antspyx wheels. I was able to reduce the final wheel size from ~300 MB to ~51 MB. The key was configuring cmake to build shared libs for ITK (and VTK, though I don't think this mattered), which also required changing the configs for symbol visibility. I then built using cibuildwheel which calls auditwheel repair to copy the resulting libs into a directory (antspyx.libs) in the wheel and modify RPATH in any libs as necessary. Surprisingly (to me) the unzipped size is about the same or even slightly bigger (extra symbols remaining?).
To run the build yourself, check out this branch and run:
% cibuildwheel --config-file ./cibuildwheel.toml --platform linux
(this will produce manylinux wheels for cp36, 37, 38, and 39)
There is probably a bit more optimization possible here:
- don't purge all build artifacts after each build
- use
stripto remove debug symbols (my initial attempt broke the wheel, but being more selective may work) - configure macOS/Windows builds
- configure CI
See below for test output (installed and run in the officeal python:3.7 Docker image) and a comparison of the final wheel contents.
Test output after install
root@1cc6f232efeb:/tests# ./run_tests.sh
/tests /tests
Running core tests
./usr/local/lib/python3.7/site-packages/ants/core/ants_image.py:479: RuntimeWarning:
invalid value encountered in true_divide
test_core_ants_image.py:284: RuntimeWarning:
invalid value encountered in true_divide
........./usr/local/lib/python3.7/site-packages/ants/core/ants_image.py:490: RuntimeWarning:
overflow encountered in power
test_core_ants_image.py:303: RuntimeWarning:
overflow encountered in power
...........................
----------------------------------------------------------------------
Ran 37 tests in 45.732s
OK
........
----------------------------------------------------------------------
Ran 8 tests in 11.877s
OK
........................
----------------------------------------------------------------------
Ran 24 tests in 3.522s
OK
...
----------------------------------------------------------------------
Ran 3 tests in 0.430s
OK
..........
----------------------------------------------------------------------
Ran 10 tests in 9.935s
OK
Running learn tests
...
----------------------------------------------------------------------
Ran 3 tests in 3.880s
OK
Running registation tests
..0.19174804
0.12775715
0.12255058
.0.1808648
0.15313405
0.13266608
0.26388648
0.21303006
0.19183911
....Starting affine interface registration test
..Starting long registration interface test
Similarity
SyNBoldAff
SyNOnly
SyNCC
TVMSQC
TVMSQ
SyN
SyNLessAggro
Rigid
ElasticSyN
SyNAggro
TRSAA
Translation
DenseRigid
SyNBold
SyNabp
BOLDAffine
BOLDRigid
SyNRA
AffineFast
Affine
QuickRigid
Finished long registration interface test
..All_Command_lines_OK
Using single precision for computations.
=============================================================================
The composite transform comprises the following transforms (in order):
1. Center of mass alignment using fixed image: 0x562764a63c90 and moving image: 0x562764a63c70 (type = Euler2DTransform)
=============================================================================
Reading mask(s).
Registration stage 0
No fixed mask
No moving mask
number of levels = 3
fixed image: 0x562764a63c90
moving image: 0x562764a63c70
fixed image: 0x56276442efc0
moving image: 0x562763f26360
fixed image: 0x56276442efc0
moving image: 0x562763f26360
Dimension = 2
Number of stages = 1
Use Histogram Matching true
Winsorize image intensities false
Lower quantile = 0
Upper quantile = 1
Stage 1 State
Image metric = Mattes
Fixed image = Image (0x562764a007f0)
RTTI typeinfo: itk::Image<float, 2u>
Reference Count: 2
Modified Time: 18469007
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 18468983
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 2
Index: [0, 0]
Size: [256, 256]
BufferedRegion:
Dimension: 2
Index: [0, 0]
Size: [256, 256]
RequestedRegion:
Dimension: 2
Index: [0, 0]
Size: [256, 256]
Spacing: [1, 1]
Origin: [0, 0]
Direction:
1 0
0 1
IndexToPointMatrix:
1 0
0 1
PointToIndexMatrix:
1 0
0 1
Inverse Direction:
1 0
0 1
PixelContainer:
ImportImageContainer (0x56276405aa10)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
Reference Count: 1
Modified Time: 18468981
Debug: Off
Object Name:
Observers:
none
Pointer: 0x562764d3a8c0
Container manages memory: true
Size: 65536
Capacity: 65536
Moving image = Image (0x5627643ba0b0)
RTTI typeinfo: itk::Image<float, 2u>
Reference Count: 2
Modified Time: 18469008
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 18469005
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 2
Index: [0, 0]
Size: [256, 256]
BufferedRegion:
Dimension: 2
Index: [0, 0]
Size: [256, 256]
RequestedRegion:
Dimension: 2
Index: [0, 0]
Size: [256, 256]
Spacing: [1, 1]
Origin: [0, 0]
Direction:
1 0
0 1
IndexToPointMatrix:
1 0
0 1
PointToIndexMatrix:
1 0
0 1
Inverse Direction:
1 0
0 1
PixelContainer:
ImportImageContainer (0x562764ca8290)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, float>
Reference Count: 1
Modified Time: 18469003
Debug: Off
Object Name:
Observers:
none
Pointer: 0x562764d7a8d0
Container manages memory: true
Size: 65536
Capacity: 65536
Weighting = 1
Sampling strategy = none
Number of bins = 32
Radius = 4
Sampling percentage = 1
Transform = SyN
Gradient step = 0.2
Update field sigma (voxel space) = 3
Total field sigma (voxel space) = 0
Update field time sigma = 0
Total field time sigma = 0
Number of time indices = 0
Number of time point samples = 0
Registration using 1 total stages.
Stage 0
iterations = 40x20x0
convergence threshold = 1e-07
convergence window size = 8
number of levels = 3
using the Mattes MI metric (number of bins = 32, weight = 1)
preprocessing: histogram matching the images
using the Demons metric (weight = 1)
preprocessing: histogram matching the images
using the CC metric (radius = 1, weight = 2)
preprocessing: histogram matching the images
Shrink factors (level 1 out of 3): [4, 4]
Shrink factors (level 2 out of 3): [2, 2]
Shrink factors (level 3 out of 3): [1, 1]
smoothing sigmas per level: [2, 1, 0]
Using default NONE metricSamplingStrategy
*** Running SyN registration (varianceForUpdateField = 3, varianceForTotalField = 0) ***
XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
1DIAGNOSTIC, 1, -7.094768285751e-01, inf, 5.5489e-02, 5.5484e-02,
1DIAGNOSTIC, 2, -7.452822327614e-01, inf, 9.7155e-02, 4.1666e-02,
1DIAGNOSTIC, 3, -7.804611921310e-01, inf, 1.3948e-01, 4.2320e-02,
1DIAGNOSTIC, 4, -8.131859302521e-01, inf, 1.8419e-01, 4.4718e-02,
1DIAGNOSTIC, 5, -8.384947776794e-01, inf, 2.3016e-01, 4.5970e-02,
1DIAGNOSTIC, 6, -8.559163212776e-01, inf, 2.7030e-01, 4.0140e-02,
1DIAGNOSTIC, 7, -8.726806640625e-01, inf, 3.1070e-01, 4.0398e-02,
1DIAGNOSTIC, 8, -8.857007622719e-01, 1.781510561705e-02, 3.5780e-01, 4.7101e-02,
1DIAGNOSTIC, 9, -8.931248188019e-01, 1.293498929590e-02, 4.0237e-01, 4.4572e-02,
1DIAGNOSTIC, 10, -9.017965793610e-01, 9.219976142049e-03, 4.4938e-01, 4.7001e-02,
1DIAGNOSTIC, 11, -9.069300889969e-01, 6.487628445029e-03, 4.9627e-01, 4.6894e-02,
1DIAGNOSTIC, 12, -9.144486188889e-01, 4.730704706162e-03, 5.4725e-01, 5.0985e-02,
1DIAGNOSTIC, 13, -9.214051961899e-01, 3.624958451837e-03, 5.9251e-01, 4.5252e-02,
1DIAGNOSTIC, 14, -9.232493638992e-01, 2.741091651842e-03, 6.3740e-01, 4.4896e-02,
1DIAGNOSTIC, 15, -9.260140657425e-01, 2.126717474312e-03, 6.8516e-01, 4.7759e-02,
1DIAGNOSTIC, 16, -9.285178780556e-01, 1.683920156211e-03, 6.9871e-01, 1.3552e-02,
1DIAGNOSTIC, 17, -9.288795590401e-01, 1.238100579940e-03, 7.4754e-01, 4.8826e-02,
1DIAGNOSTIC, 18, -9.278711080551e-01, 8.420256199315e-04, 7.9462e-01, 4.7084e-02,
1DIAGNOSTIC, 19, -9.290444850922e-01, 5.025824648328e-04, 8.4357e-01, 4.8949e-02,
1DIAGNOSTIC, 20, -9.280127286911e-01, 2.529128978495e-04, 8.9313e-01, 4.9560e-02,
1DIAGNOSTIC, 21, -9.283567070961e-01, 1.319591247011e-04, 9.4018e-01, 4.7050e-02,
1DIAGNOSTIC, 22, -9.295458793640e-01, 5.865417188033e-05, 9.9037e-01, 5.0184e-02,
1DIAGNOSTIC, 23, -9.298964738846e-01, 3.610842759372e-05, 1.0400e+00, 4.9602e-02,
1DIAGNOSTIC, 24, -9.297755360603e-01, 5.010432505514e-05, 1.0879e+00, 4.7925e-02,
1DIAGNOSTIC, 25, -9.296480417252e-01, 6.034512989572e-05, 1.1373e+00, 4.9366e-02,
1DIAGNOSTIC, 26, -9.299656748772e-01, 4.958057616022e-05, 1.1847e+00, 4.7477e-02,
1DIAGNOSTIC, 27, -9.328428506851e-01, 9.174687147606e-05, 1.2303e+00, 4.5541e-02,
1DIAGNOSTIC, 28, -9.302343130112e-01, 6.630360439885e-05, 1.2746e+00, 4.4306e-02,
1DIAGNOSTIC, 29, -9.328865408897e-01, 7.511176954722e-05, 1.3180e+00, 4.3459e-02,
1DIAGNOSTIC, 30, -9.330023527145e-01, 8.787133992882e-05, 1.3631e+00, 4.5072e-02,
1DIAGNOSTIC, 31, -9.336123466492e-01, 9.901649173116e-05, 1.4079e+00, 4.4762e-02,
1DIAGNOSTIC, 32, -9.326332807541e-01, 8.253210398834e-05, 1.4541e+00, 4.6195e-02,
1DIAGNOSTIC, 33, -9.329857826233e-01, 5.811451410409e-05, 1.5052e+00, 5.1114e-02,
1DIAGNOSTIC, 34, -9.326282739639e-01, 2.468198181305e-05, 1.5493e+00, 4.4077e-02,
1DIAGNOSTIC, 35, -9.312992095947e-01, 8.191099368560e-06, 1.5942e+00, 4.4960e-02,
1DIAGNOSTIC, 36, -9.327377080917e-01, -2.106719512085e-05, 1.6386e+00, 4.4344e-02,
XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
1DIAGNOSTIC, 1, -8.091835975647e-01, inf, 1.7207e+00, 8.2104e-02,
1DIAGNOSTIC, 2, -8.267697095871e-01, inf, 1.7714e+00, 5.0686e-02,
1DIAGNOSTIC, 3, -8.435548543930e-01, inf, 1.8192e+00, 4.7803e-02,
1DIAGNOSTIC, 4, -8.539028167725e-01, inf, 1.8730e+00, 5.3805e-02,
1DIAGNOSTIC, 5, -8.627756834030e-01, inf, 1.9255e+00, 5.2538e-02,
1DIAGNOSTIC, 6, -8.699707984924e-01, inf, 1.9751e+00, 4.9571e-02,
1DIAGNOSTIC, 7, -8.752191066742e-01, inf, 2.0493e+00, 7.4204e-02,
1DIAGNOSTIC, 8, -8.801509141922e-01, 6.587078329176e-03, 2.1310e+00, 8.1748e-02,
1DIAGNOSTIC, 9, -8.844894170761e-01, 4.632842727005e-03, 2.1768e+00, 4.5801e-02,
1DIAGNOSTIC, 10, -8.872686624527e-01, 3.271606983617e-03, 2.2314e+00, 5.4552e-02,
1DIAGNOSTIC, 11, -8.899288177490e-01, 2.430945169181e-03, 2.2900e+00, 5.8616e-02,
1DIAGNOSTIC, 12, -8.897299766541e-01, 1.737083657645e-03, 2.3468e+00, 5.6835e-02,
1DIAGNOSTIC, 13, -8.922611474991e-01, 1.263190293685e-03, 2.4079e+00, 6.1095e-02,
1DIAGNOSTIC, 14, -8.915022015572e-01, 8.642197353765e-04, 2.4781e+00, 7.0188e-02,
1DIAGNOSTIC, 15, -8.937164545059e-01, 5.986249307171e-04, 2.5325e+00, 5.4404e-02,
1DIAGNOSTIC, 16, -8.939468264580e-01, 4.103929386474e-04, 2.5946e+00, 6.2051e-02,
1DIAGNOSTIC, 17, -8.955245018005e-01, 3.261145902798e-04, 2.6522e+00, 5.7634e-02,
1DIAGNOSTIC, 18, -8.947955369949e-01, 2.494752989151e-04, 2.7143e+00, 6.2078e-02,
1DIAGNOSTIC, 19, -8.966089487076e-01, 2.409342268948e-04, 2.7723e+00, 5.8029e-02,
1DIAGNOSTIC, 20, -8.953372836113e-01, 1.671438512858e-04, 2.8347e+00, 6.2354e-02,
Elapsed time (stage 0): 2.89229
Total elapsed time: 2.89295
....Using single precision for computations.
Input scalar image: 0x562763a41050
Reference image: 0x56276442efa0
=============================================================================
The composite transform comprises the following transforms (in order):
1. identity (type = MatrixOffsetTransformBase)
=============================================================================
Default pixel value: 0
Interpolation type: LinearInterpolateImageFunction
Output warped image: 0x562764314b60
..
----------------------------------------------------------------------
Ran 17 tests in 273.888s
OK
Running segmentation tests
.. Otsu Thresh with 3 thresholds
Otsu Thresh with 3 thresholds
Otsu Thresh with 3 thresholds
Otsu Thresh with 3 thresholds
Otsu Thresh with 3 thresholds
.....
----------------------------------------------------------------------
Ran 7 tests in 20.944s
OK
Running utils tests
....................................True
.False
False
......
----------------------------------------------------------------------
Ran 43 tests in 31.822s
OK
Running bug tests
.
----------------------------------------------------------------------
Ran 1 test in 0.476s
OK
/tests
Contents of wheel with shared ITK libs
~/src/oss/ANTsPy/wheelhouse on shared-itk [?] via 🐍 v3.10.0 (.venv)
❯ unzip -l antspyx-0.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Archive: antspyx-0.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Length Date Time Name
--------- ---------- ----- ----
0 04-05-2022 03:16 antspyx.libs/
0 04-05-2022 03:16 ants/
0 04-05-2022 03:16 antspyx-0.3.2.dist-info/
534824 04-05-2022 03:18 antspyx.libs/libitktiff-5-676c3f9f.3.so.1
404096 04-05-2022 03:16 antspyx.libs/libitkgdcmopenjp2-5-21100300.3.so.1
101104 04-05-2022 03:18 antspyx.libs/libITKRegistrationMethodsv4-5-5768b011.3.so.1
295912 04-05-2022 03:18 antspyx.libs/libITKIOTransformMatlab-5-2e6a88da.3.so.1
248312 04-05-2022 03:18 antspyx.libs/libITKIOLSM-5-bd6bdcb3.3.so.1
584016 04-05-2022 03:16 antspyx.libs/libitksys-5-9387fd6e.3.so.1
1132200 04-05-2022 03:18 antspyx.libs/libITKOptimizers-5-825fe76b.3.so.1
72976 04-05-2022 03:18 antspyx.libs/libITKPolynomials-5-7acf0399.3.so.1
531888 04-05-2022 03:18 antspyx.libs/libitkminc2-5-b55b2e59.3.so.1
276232 04-05-2022 03:18 antspyx.libs/libITKIOMeshBYU-5-af5ee9b7.3.so.1
2846352 04-05-2022 03:18 antspyx.libs/libitkgdcmDICT-5-602b02a3.3.so.1
67856 04-05-2022 03:18 antspyx.libs/libITKMesh-5-33e82eca.3.so.1
140952 04-05-2022 03:18 antspyx.libs/libITKIOCSV-5-5d35fb7f.3.so.1
812224 04-05-2022 03:18 antspyx.libs/libITKSpatialObjects-5-e8152a73.3.so.1
1680448 04-05-2022 03:18 antspyx.libs/libitkvnl_algo-5-e6ce72e1.3.so.1
17216 04-05-2022 03:16 antspyx.libs/libITKSmoothing-5-141064e8.3.so.1
41456 04-05-2022 03:18 antspyx.libs/libitkNetlibSlatec-5-e614f7e3.3.so.1
313424 04-05-2022 03:16 antspyx.libs/libitkjpeg-5-3bbeee3a.3.so.1
759176 04-05-2022 03:18 antspyx.libs/libITKIOTransformBase-5-121f2389.3.so.1
21512 04-05-2022 03:16 antspyx.libs/libITKDenoising-5-00f91b7d.3.so.1
1208520 04-05-2022 03:18 antspyx.libs/libITKIOMeshVTK-5-09a0899c.3.so.1
1322152 04-05-2022 03:18 antspyx.libs/libitkgdcmDSED-5-e6ec6a7b.3.so.1
6527496 04-05-2022 03:18 antspyx.libs/libITKFFT-5-ea8e03b8.3.so.1
70848 04-05-2022 03:18 antspyx.libs/libITKRegionGrowing-5-c45e7396.3.so.1
169280 04-05-2022 03:18 antspyx.libs/libITKWatersheds-5-29b97520.3.so.1
327920 04-05-2022 03:18 antspyx.libs/libITKIOXML-5-3a1e8b08.3.so.1
234104 04-05-2022 03:18 antspyx.libs/libITKIOMeshBase-5-6fec2de6.3.so.1
154920 04-05-2022 03:18 antspyx.libs/libITKKLMRegionGrowing-5-e9d012cc.3.so.1
219712 04-05-2022 03:18 antspyx.libs/libITKIOGIPL-5-b7f79d5a.3.so.1
5013840 04-05-2022 03:18 antspyx.libs/libitkhdf5-shared-5-cfd06ae4.3.so.1
21656 04-05-2022 03:16 antspyx.libs/libitkvcl-5-bb700565.3.so.1
340272 04-05-2022 03:18 antspyx.libs/libITKNrrdIO-5-ca003690.3.so.1
83336 04-05-2022 03:18 antspyx.libs/libITKPDEDeformableRegistration-5-551d8f54.3.so.1
70848 04-05-2022 03:18 antspyx.libs/libITKMathematicalMorphology-5-7a3f72c7.3.so.1
469696 04-05-2022 03:18 antspyx.libs/libITKIOMeshGifti-5-69409b91.3.so.1
62656 04-05-2022 03:18 antspyx.libs/libITKQuadEdgeMeshFiltering-5-67af6c32.3.so.1
37408 04-05-2022 03:18 antspyx.libs/libITKVNLInstantiation-5-9c5f799d.3.so.1
403272 04-05-2022 03:18 antspyx.libs/libITKIONIFTI-5-4f0ac868.3.so.1
246520 04-05-2022 03:16 antspyx.libs/libitkgdcmjpeg8-5-c066f1af.3.so.1
291936 04-05-2022 03:18 antspyx.libs/libITKIOIPL-5-b8ad9712.3.so.1
211336 04-05-2022 03:18 antspyx.libs/libITKIOSiemens-5-228a2bc0.3.so.1
382056 04-05-2022 03:18 antspyx.libs/libITKIOMeshFreeSurfer-5-4e372563.3.so.1
174872 04-05-2022 03:18 antspyx.libs/libITKniftiio-5-671cd6c6.3.so.1
109576 04-05-2022 03:16 antspyx.libs/libitkgdcmCommon-5-49c20d24.3.so.1
238448 04-05-2022 03:16 antspyx.libs/libitkgdcmjpeg12-5-4d714595.3.so.1
977144 04-05-2022 03:18 antspyx.libs/libITKMetaIO-5-8bf156dd.3.so.1
237648 04-05-2022 03:16 antspyx.libs/libitkopenjpeg-5-1a34806f.3.so.1
228368 04-05-2022 03:18 antspyx.libs/libITKIOJPEG-5-d06d0bfe.3.so.1
282640 04-05-2022 03:18 antspyx.libs/libITKIOJPEG2000-5-42f282e4.3.so.1
75000 04-05-2022 03:18 antspyx.libs/libITKConvolution-5-091f396c.3.so.1
309880 04-05-2022 03:18 antspyx.libs/libITKIOGE-5-6163aea1.3.so.1
68240 04-05-2022 03:18 antspyx.libs/libITKQuadEdgeMesh-5-2c5b682d.3.so.1
215824 04-05-2022 03:18 antspyx.libs/libITKIOBMP-5-9aaf95d2.3.so.1
221408 04-05-2022 03:18 antspyx.libs/libITKgiftiio-5-cc59ef32.3.so.1
29128 04-05-2022 03:18 antspyx.libs/libITKznz-5-488075b2.3.so.1
691296 04-05-2022 03:18 antspyx.libs/libITKIOHDF5-5-daaa54a0.3.so.1
404136 04-05-2022 03:18 antspyx.libs/libITKIOMeta-5-7d3e013b.3.so.1
207944 04-05-2022 03:18 antspyx.libs/libITKIOBioRad-5-d193602d.3.so.1
324472 04-05-2022 03:18 antspyx.libs/libITKIONRRD-5-a59385d5.3.so.1
187360 04-05-2022 03:16 antspyx.libs/libpng15-ce838cd1.so.15.13.0
220464 04-05-2022 03:18 antspyx.libs/libITKIOStimulate-5-78e40c98.3.so.1
339512 04-05-2022 03:18 antspyx.libs/libITKIOBruker-5-f2fcb35b.3.so.1
669152 04-05-2022 03:18 antspyx.libs/libITKIOGDCM-5-989e05ac.3.so.1
375760 04-05-2022 03:18 antspyx.libs/libITKIOMINC-5-c6454c1a.3.so.1
62552 04-05-2022 03:18 antspyx.libs/libITKImageFeature-5-7b832af5.3.so.1
624232 04-05-2022 03:16 antspyx.libs/libitkgdcmcharls-5-473d5561.3.so.1
154120 04-05-2022 03:16 antspyx.libs/libitkzlib-5-8d51c88c.3.so.1.2.11.zlib-ng
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0 04-05-2022 03:16 ants/learn/
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1007 04-05-2022 03:16 ants/utils/hausdorff_distance.py
2490 04-05-2022 03:16 ants/utils/label_image_centroids.py
3400 04-05-2022 03:16 ants/utils/ndimage_to_list.py
2321 04-05-2022 03:16 ants/utils/denoise_image.py
4863 04-05-2022 03:16 ants/utils/impute.py
2480 04-05-2022 03:16 ants/utils/smooth_image.py
4161 04-05-2022 03:16 ants/utils/morphology.py
2435 04-05-2022 03:16 ants/utils/ants_integrate_velocity_field.py
1624 04-05-2022 03:16 ants/utils/histogram_match_image.py
6473 04-05-2022 03:16 ants/utils/get_neighborhood.py
1397 04-05-2022 03:16 ants/utils/image_to_cluster_images.py
1023 04-05-2022 03:16 ants/utils/label_stats.py
8235 04-05-2022 03:16 ants/utils/fit_bspline_object_to_scattered_data.py
1162 04-05-2022 03:16 ants/utils/label_overlap_measures.py
7974 04-05-2022 03:16 ants/utils/invariant_image_similarity.py
2517 04-05-2022 03:16 ants/utils/channels.py
1500 04-05-2022 03:16 ants/utils/get_centroids.py
1903 04-05-2022 03:16 ants/utils/labels_to_matrix.py
1572 04-05-2022 03:16 ants/utils/convert_nibabel.py
1248 04-05-2022 03:16 ants/utils/__init__.py
5923 04-05-2022 03:16 ants/utils/iMath.py
8429 04-05-2022 03:16 ants/utils/fit_bspline_displacement_field.py
1436 04-05-2022 03:16 ants/utils/label_clusters.py
3976 04-05-2022 03:16 ants/utils/multi_label_morphology.py
1875 04-05-2022 03:16 ants/utils/weingarten_image_curvature.py
819 04-05-2022 03:16 ants/utils/slice_image.py
2609 04-05-2022 03:16 ants/utils/get_mask.py
1536 04-05-2022 03:16 ants/utils/mask_image.py
13623 04-05-2022 03:16 ants/utils/quantile.py
4392 04-05-2022 03:16 ants/utils/crop_image.py
9863 04-05-2022 03:16 ants/utils/bias_correction.py
2969 04-05-2022 03:16 ants/utils/get_ants_data.py
2364 04-05-2022 03:16 ants/utils/process_args.py
4171 04-05-2022 03:16 ants/utils/scalar_rgb_vector.py
2500 04-05-2022 03:16 ants/utils/pad_image.py
1609 04-05-2022 03:16 ants/utils/threshold_image.py
3368 04-05-2022 03:16 ants/utils/simulate_displacement_field.py
1716 04-05-2022 03:16 ants/utils/image_similarity.py
1377 04-05-2022 03:16 ants/utils/mni2tal.py
3211 04-05-2022 03:16 ants/utils/add_noise_to_image.py
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740405184 04-05-2022 03:18 ants/lib/antsRegistration.cpython-37m-x86_64-linux-gnu.so
1749624 04-05-2022 03:18 ants/lib/fsl2antstransform.cpython-37m-x86_64-linux-gnu.so
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3727360 04-05-2022 03:18 ants/lib/fitBsplineObjectToScatteredData.cpython-37m-x86_64-linux-gnu.so
1576536 04-05-2022 03:18 ants/lib/reorientImage.cpython-37m-x86_64-linux-gnu.so
3302592 04-05-2022 03:18 ants/lib/hausdorffDistance.cpython-37m-x86_64-linux-gnu.so
1369472 04-05-2022 03:16 ants/lib/antsImageUtils.cpython-37m-x86_64-linux-gnu.so
2385968 04-05-2022 03:18 ants/lib/labelStats.cpython-37m-x86_64-linux-gnu.so
7334992 04-05-2022 03:18 ants/lib/antsTransform.cpython-37m-x86_64-linux-gnu.so
2459672 04-05-2022 03:18 ants/lib/padImage.cpython-37m-x86_64-linux-gnu.so
2331872 04-05-2022 03:18 ants/lib/sliceImage.cpython-37m-x86_64-linux-gnu.so
2684680 04-05-2022 03:16 ants/lib/antiAlias.cpython-37m-x86_64-linux-gnu.so
1999536 04-05-2022 03:16 ants/lib/antsImageClone.cpython-37m-x86_64-linux-gnu.so
2349 04-05-2022 03:16 ants/lib/__init__.py
2410568 04-05-2022 03:16 ants/lib/addNoiseToImage.cpython-37m-x86_64-linux-gnu.so
2896464 04-05-2022 03:18 ants/lib/integrateVelocityField.cpython-37m-x86_64-linux-gnu.so
2770168 04-05-2022 03:18 ants/lib/rgbToVector.cpython-37m-x86_64-linux-gnu.so
4149472 04-05-2022 03:16 ants/lib/ThresholdImage.cpython-37m-x86_64-linux-gnu.so
3684768 04-05-2022 03:18 ants/lib/sccaner.cpython-37m-x86_64-linux-gnu.so
2096816 04-05-2022 03:18 ants/lib/getNeighborhoodMatrix.cpython-37m-x86_64-linux-gnu.so
4504056 04-05-2022 03:16 ants/lib/antsImageToImageMetric.cpython-37m-x86_64-linux-gnu.so
5340592 04-05-2022 03:16 ants/lib/DenoiseImage.cpython-37m-x86_64-linux-gnu.so
8911048 04-05-2022 03:16 ants/lib/Atropos.cpython-37m-x86_64-linux-gnu.so
3323088 04-05-2022 03:16 ants/lib/CreateJacobianDeterminantImage.cpython-37m-x86_64-linux-gnu.so
3291664 04-05-2022 03:16 ants/lib/TileImages.cpython-37m-x86_64-linux-gnu.so
2768288 04-05-2022 03:18 ants/lib/cropImage.cpython-37m-x86_64-linux-gnu.so
1970912 04-05-2022 03:18 ants/lib/mergeChannels.cpython-37m-x86_64-linux-gnu.so
8867168 04-05-2022 03:16 ants/lib/ResampleImage.cpython-37m-x86_64-linux-gnu.so
2652712 04-05-2022 03:16 ants/lib/SmoothImage.cpython-37m-x86_64-linux-gnu.so
2690464 04-05-2022 03:18 ants/lib/weingartenImageCurvature.cpython-37m-x86_64-linux-gnu.so
15239160 04-05-2022 03:16 ants/lib/antsApplyTransforms.cpython-37m-x86_64-linux-gnu.so
2685320 04-05-2022 03:18 ants/lib/fitBsplineDisplacementField.cpython-37m-x86_64-linux-gnu.so
4132840 04-05-2022 03:16 ants/lib/LabelGeometryMeasures.cpython-37m-x86_64-linux-gnu.so
6283760 04-05-2022 03:16 ants/lib/antsApplyTransformsToPoints.cpython-37m-x86_64-linux-gnu.so
3980880 04-05-2022 03:18 ants/lib/readImage.cpython-37m-x86_64-linux-gnu.so
6521816 04-05-2022 03:16 ants/lib/N3BiasFieldCorrection.cpython-37m-x86_64-linux-gnu.so
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2303216 04-05-2022 03:18 ants/lib/reorientImage2.cpython-37m-x86_64-linux-gnu.so
2583528 04-05-2022 03:18 ants/lib/histogramMatchImage.cpython-37m-x86_64-linux-gnu.so
5702128 04-05-2022 03:16 ants/lib/N4BiasFieldCorrection.cpython-37m-x86_64-linux-gnu.so
3949336 04-05-2022 03:16 ants/lib/LabelClustersUniquely.cpython-37m-x86_64-linux-gnu.so
4449560 04-05-2022 03:16 ants/lib/CreateTiledMosaic.cpython-37m-x86_64-linux-gnu.so
3060384 04-05-2022 03:16 ants/lib/ConvertScalarImageToRGB.cpython-37m-x86_64-linux-gnu.so
0 04-05-2022 03:16 ants/contrib/sampling/
0 04-05-2022 03:16 ants/contrib/bids/
0 04-05-2022 03:16 ants/contrib/sklearn_interface/
59 04-05-2022 03:16 ants/contrib/__init__.py
21671 04-05-2022 03:16 ants/contrib/sampling/affine2d.py
24051 04-05-2022 03:16 ants/contrib/sampling/affine3d.py
24297 04-05-2022 03:16 ants/contrib/sampling/transforms.py
75 04-05-2022 03:16 ants/contrib/sampling/__init__.py
22 04-05-2022 03:16 ants/contrib/bids/__init__.py
3032 04-05-2022 03:16 ants/contrib/bids/cohort.py
37 04-05-2022 03:16 ants/contrib/sklearn_interface/__init__.py
5900 04-05-2022 03:16 ants/contrib/sklearn_interface/sklearn_registration.py
2134 04-05-2022 03:16 ants/segmentation/prior_based_segmentation.py
968 04-05-2022 03:16 ants/segmentation/otsu.py
1955 04-05-2022 03:16 ants/segmentation/kelly_kapowski.py
1421 04-05-2022 03:16 ants/segmentation/label_geometry_measures.py
401 04-05-2022 03:16 ants/segmentation/__init__.py
1101 04-05-2022 03:16 ants/segmentation/anti_alias.py
6278 04-05-2022 03:16 ants/segmentation/functional_lung_segmentation.py
1247 04-05-2022 03:16 ants/segmentation/kmeans.py
18925 04-05-2022 03:16 ants/segmentation/joint_label_fusion.py
5106 04-05-2022 03:16 ants/segmentation/fuzzy_spatial_cmeans_segmentation.py
5204 04-05-2022 03:16 ants/segmentation/atropos.py
4152 04-05-2022 03:16 ants/viz/create_tiled_mosaic.py
26238 04-05-2022 03:16 ants/viz/volume.py
139 04-05-2022 03:16 ants/viz/__init__.py
31219 04-05-2022 03:16 ants/viz/surface.py
87442 04-05-2022 03:16 ants/viz/plot.py
5503 04-05-2022 03:16 ants/viz/render_surface_function.py
3155 04-05-2022 03:16 ants/core/ants_metric_io.py
33118 04-05-2022 03:16 ants/core/ants_image.py
17883 04-05-2022 03:16 ants/core/ants_image_io.py
177 04-05-2022 03:16 ants/core/__init__.py
14318 04-05-2022 03:16 ants/core/ants_transform.py
9158 04-05-2022 03:16 ants/core/ants_transform_io.py
4438 04-05-2022 03:16 ants/core/ants_metric.py
3143 04-05-2022 03:16 ants/registration/build_template.py
1376 04-05-2022 03:16 ants/registration/symmetrize_image.py
452 04-05-2022 03:16 ants/registration/__init__.py
3991 04-05-2022 03:16 ants/registration/create_warped_grid.py
5955 04-05-2022 03:16 ants/registration/resample_image.py
1024 04-05-2022 03:16 ants/registration/metrics.py
1533 04-05-2022 03:16 ants/registration/reflect_image.py
3033 04-05-2022 03:16 ants/registration/reorient_image.py
63183 04-05-2022 03:16 ants/registration/interface.py
1750 04-05-2022 03:16 ants/registration/make_points_image.py
1708 04-05-2022 03:16 ants/registration/create_jacobian_determinant_image.py
1359 04-05-2022 03:16 ants/registration/fsl2antstransform.py
2581 04-05-2022 03:16 ants/registration/landmark_transforms.py
12151 04-05-2022 03:16 ants/registration/apply_transforms.py
2116 04-05-2022 03:16 ants/registration/affine_initializer.py
11357 04-05-2022 03:16 antspyx-0.3.2.dist-info/LICENSE
5 04-05-2022 03:16 antspyx-0.3.2.dist-info/top_level.txt
5830 04-05-2022 03:16 antspyx-0.3.2.dist-info/METADATA
26150 04-05-2022 03:19 antspyx-0.3.2.dist-info/RECORD
150 04-05-2022 03:18 antspyx-0.3.2.dist-info/WHEEL
--------- -------
1061965225 270 files
Contents of wheel with static ITK libs
~/src/oss/ANTsPy/wheelhouse on shared-itk [?] via 🐍 v3.10.0 (.venv)
❯ unzip -l pypi/antspyx-0.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Archive: pypi/antspyx-0.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Length Date Time Name
--------- ---------- ----- ----
0 03-19-2022 15:50 antspyx.libs/
0 03-19-2022 15:50 ants/
0 03-19-2022 15:50 antspyx-0.3.2.dist-info/
1097008 03-19-2022 15:50 antspyx.libs/libpng16-2aa3e9dc.so.16.38.0
0 03-19-2022 15:50 ants/core/
0 03-19-2022 15:50 ants/learn/
0 03-19-2022 15:50 ants/registration/
0 03-19-2022 15:50 ants/lib/
0 03-19-2022 15:50 ants/contrib/
0 03-19-2022 15:50 ants/utils/
0 03-19-2022 15:50 ants/viz/
0 03-19-2022 15:50 ants/segmentation/
221 03-19-2022 15:50 ants/__init__.py
22 03-19-2022 15:50 ants/version.py
177 03-19-2022 15:50 ants/core/__init__.py
3155 03-19-2022 15:50 ants/core/ants_metric_io.py
9158 03-19-2022 15:50 ants/core/ants_transform_io.py
4438 03-19-2022 15:50 ants/core/ants_metric.py
17883 03-19-2022 15:50 ants/core/ants_image_io.py
33118 03-19-2022 15:50 ants/core/ants_image.py
14318 03-19-2022 15:50 ants/core/ants_transform.py
29 03-19-2022 15:50 ants/learn/__init__.py
13566 03-19-2022 15:50 ants/learn/decomposition.py
1024 03-19-2022 15:50 ants/registration/metrics.py
452 03-19-2022 15:50 ants/registration/__init__.py
3991 03-19-2022 15:50 ants/registration/create_warped_grid.py
12151 03-19-2022 15:50 ants/registration/apply_transforms.py
1376 03-19-2022 15:50 ants/registration/symmetrize_image.py
2116 03-19-2022 15:50 ants/registration/affine_initializer.py
63183 03-19-2022 15:50 ants/registration/interface.py
1750 03-19-2022 15:50 ants/registration/make_points_image.py
1359 03-19-2022 15:50 ants/registration/fsl2antstransform.py
5955 03-19-2022 15:50 ants/registration/resample_image.py
2581 03-19-2022 15:50 ants/registration/landmark_transforms.py
1533 03-19-2022 15:50 ants/registration/reflect_image.py
3143 03-19-2022 15:50 ants/registration/build_template.py
1708 03-19-2022 15:50 ants/registration/create_jacobian_determinant_image.py
3033 03-19-2022 15:50 ants/registration/reorient_image.py
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16067008 03-19-2022 15:50 ants/lib/ThresholdImage.cpython-37m-x86_64-linux-gnu.so
14442816 03-19-2022 15:50 ants/lib/antsImageUtils.cpython-37m-x86_64-linux-gnu.so
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15329408 03-19-2022 15:50 ants/lib/rgbToVector.cpython-37m-x86_64-linux-gnu.so
21728936 03-19-2022 15:50 ants/lib/fsl2antstransform.cpython-37m-x86_64-linux-gnu.so
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15776168 03-19-2022 15:50 ants/lib/sccaner.cpython-37m-x86_64-linux-gnu.so
14414072 03-19-2022 15:50 ants/lib/antsImageHeaderInfo.cpython-37m-x86_64-linux-gnu.so
14923936 03-19-2022 15:50 ants/lib/labelStats.cpython-37m-x86_64-linux-gnu.so
15153376 03-19-2022 15:50 ants/lib/cropImage.cpython-37m-x86_64-linux-gnu.so
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22022488 03-19-2022 15:50 ants/lib/ResampleImage.cpython-37m-x86_64-linux-gnu.so
15468872 03-19-2022 15:50 ants/lib/CreateJacobianDeterminantImage.cpython-37m-x86_64-linux-gnu.so
21970544 03-19-2022 15:50 ants/lib/reflectionMatrix.cpython-37m-x86_64-linux-gnu.so
15735128 03-19-2022 15:50 ants/lib/LabelClustersUniquely.cpython-37m-x86_64-linux-gnu.so
14993560 03-19-2022 15:50 ants/lib/labelOverlapMeasures.cpython-37m-x86_64-linux-gnu.so
15362456 03-19-2022 15:50 ants/lib/TileImages.cpython-37m-x86_64-linux-gnu.so
14891120 03-19-2022 15:50 ants/lib/sliceImage.cpython-37m-x86_64-linux-gnu.so
20757672 03-19-2022 15:50 ants/lib/Atropos.cpython-37m-x86_64-linux-gnu.so
15182112 03-19-2022 15:50 ants/lib/fitBsplineDisplacementFieldToScatteredData.cpython-37m-x86_64-linux-gnu.so
15005864 03-19-2022 15:50 ants/lib/histogramMatchImage.cpython-37m-x86_64-linux-gnu.so
31879536 03-19-2022 15:50 ants/lib/antsApplyTransforms.cpython-37m-x86_64-linux-gnu.so
16025872 03-19-2022 15:50 ants/lib/fitBsplineObjectToScatteredData.cpython-37m-x86_64-linux-gnu.so
17427728 03-19-2022 15:50 ants/lib/DenoiseImage.cpython-37m-x86_64-linux-gnu.so
15186192 03-19-2022 15:50 ants/lib/fitBsplineDisplacementField.cpython-37m-x86_64-linux-gnu.so
23655224 03-19-2022 15:50 ants/lib/antsAffineInitializer.cpython-37m-x86_64-linux-gnu.so
22847336 03-19-2022 15:50 ants/lib/LabelGeometryMeasures.cpython-37m-x86_64-linux-gnu.so
14960744 03-19-2022 15:50 ants/lib/addNoiseToImage.cpython-37m-x86_64-linux-gnu.so
14993600 03-19-2022 15:50 ants/lib/padImage.cpython-37m-x86_64-linux-gnu.so
16329992 03-19-2022 15:50 ants/lib/antsJointFusion.cpython-37m-x86_64-linux-gnu.so
16099560 03-19-2022 15:50 ants/lib/simulateDisplacementField.cpython-37m-x86_64-linux-gnu.so
16337112 03-19-2022 15:50 ants/lib/readImage.cpython-37m-x86_64-linux-gnu.so
15464584 03-19-2022 15:50 ants/lib/hausdorffDistance.cpython-37m-x86_64-linux-gnu.so
14963072 03-19-2022 15:50 ants/lib/getNeighborhoodMatrix.cpython-37m-x86_64-linux-gnu.so
15022184 03-19-2022 15:50 ants/lib/mergeChannels.cpython-37m-x86_64-linux-gnu.so
69498312 03-19-2022 15:50 ants/lib/antsRegistration.cpython-37m-x86_64-linux-gnu.so
18221288 03-19-2022 15:50 ants/lib/antsImageAugment.cpython-37m-x86_64-linux-gnu.so
21778136 03-19-2022 15:50 ants/lib/readTransform.cpython-37m-x86_64-linux-gnu.so
15054896 03-19-2022 15:50 ants/lib/antsImageClone.cpython-37m-x86_64-linux-gnu.so
0 03-19-2022 15:50 ants/contrib/sklearn_interface/
0 03-19-2022 15:50 ants/contrib/bids/
0 03-19-2022 15:50 ants/contrib/sampling/
59 03-19-2022 15:50 ants/contrib/__init__.py
37 03-19-2022 15:50 ants/contrib/sklearn_interface/__init__.py
5900 03-19-2022 15:50 ants/contrib/sklearn_interface/sklearn_registration.py
22 03-19-2022 15:50 ants/contrib/bids/__init__.py
3032 03-19-2022 15:50 ants/contrib/bids/cohort.py
75 03-19-2022 15:50 ants/contrib/sampling/__init__.py
24051 03-19-2022 15:50 ants/contrib/sampling/affine3d.py
24297 03-19-2022 15:50 ants/contrib/sampling/transforms.py
21671 03-19-2022 15:50 ants/contrib/sampling/affine2d.py
3368 03-19-2022 15:50 ants/utils/simulate_displacement_field.py
1248 03-19-2022 15:50 ants/utils/__init__.py
1500 03-19-2022 15:50 ants/utils/get_centroids.py
7974 03-19-2022 15:50 ants/utils/invariant_image_similarity.py
1397 03-19-2022 15:50 ants/utils/image_to_cluster_images.py
4171 03-19-2022 15:50 ants/utils/scalar_rgb_vector.py
1716 03-19-2022 15:50 ants/utils/image_similarity.py
2435 03-19-2022 15:50 ants/utils/ants_integrate_velocity_field.py
819 03-19-2022 15:50 ants/utils/slice_image.py
8429 03-19-2022 15:50 ants/utils/fit_bspline_displacement_field.py
1007 03-19-2022 15:50 ants/utils/hausdorff_distance.py
1436 03-19-2022 15:50 ants/utils/label_clusters.py
1162 03-19-2022 15:50 ants/utils/label_overlap_measures.py
4161 03-19-2022 15:50 ants/utils/morphology.py
2517 03-19-2022 15:50 ants/utils/channels.py
1903 03-19-2022 15:50 ants/utils/labels_to_matrix.py
3976 03-19-2022 15:50 ants/utils/multi_label_morphology.py
1875 03-19-2022 15:50 ants/utils/weingarten_image_curvature.py
4392 03-19-2022 15:50 ants/utils/crop_image.py
1609 03-19-2022 15:50 ants/utils/threshold_image.py
2480 03-19-2022 15:50 ants/utils/smooth_image.py
1624 03-19-2022 15:50 ants/utils/histogram_match_image.py
1377 03-19-2022 15:50 ants/utils/mni2tal.py
1572 03-19-2022 15:50 ants/utils/convert_nibabel.py
2490 03-19-2022 15:50 ants/utils/label_image_centroids.py
8235 03-19-2022 15:50 ants/utils/fit_bspline_object_to_scattered_data.py
1536 03-19-2022 15:50 ants/utils/mask_image.py
2500 03-19-2022 15:50 ants/utils/pad_image.py
3211 03-19-2022 15:50 ants/utils/add_noise_to_image.py
2969 03-19-2022 15:50 ants/utils/get_ants_data.py
6473 03-19-2022 15:50 ants/utils/get_neighborhood.py
1023 03-19-2022 15:50 ants/utils/label_stats.py
9863 03-19-2022 15:50 ants/utils/bias_correction.py
13623 03-19-2022 15:50 ants/utils/quantile.py
2364 03-19-2022 15:50 ants/utils/process_args.py
4863 03-19-2022 15:50 ants/utils/impute.py
2609 03-19-2022 15:50 ants/utils/get_mask.py
3400 03-19-2022 15:50 ants/utils/ndimage_to_list.py
5923 03-19-2022 15:50 ants/utils/iMath.py
2321 03-19-2022 15:50 ants/utils/denoise_image.py
139 03-19-2022 15:50 ants/viz/__init__.py
4152 03-19-2022 15:50 ants/viz/create_tiled_mosaic.py
26238 03-19-2022 15:50 ants/viz/volume.py
31219 03-19-2022 15:50 ants/viz/surface.py
5503 03-19-2022 15:50 ants/viz/render_surface_function.py
87442 03-19-2022 15:50 ants/viz/plot.py
401 03-19-2022 15:50 ants/segmentation/__init__.py
18925 03-19-2022 15:50 ants/segmentation/joint_label_fusion.py
1247 03-19-2022 15:50 ants/segmentation/kmeans.py
1421 03-19-2022 15:50 ants/segmentation/label_geometry_measures.py
968 03-19-2022 15:50 ants/segmentation/otsu.py
1955 03-19-2022 15:50 ants/segmentation/kelly_kapowski.py
2134 03-19-2022 15:50 ants/segmentation/prior_based_segmentation.py
1101 03-19-2022 15:50 ants/segmentation/anti_alias.py
6278 03-19-2022 15:50 ants/segmentation/functional_lung_segmentation.py
5204 03-19-2022 15:50 ants/segmentation/atropos.py
5106 03-19-2022 15:50 ants/segmentation/fuzzy_spatial_cmeans_segmentation.py
14981 03-19-2022 15:50 antspyx-0.3.2.dist-info/RECORD
150 03-19-2022 15:50 antspyx-0.3.2.dist-info/WHEEL
5830 03-19-2022 15:50 antspyx-0.3.2.dist-info/METADATA
5 03-19-2022 15:50 antspyx-0.3.2.dist-info/top_level.txt
11357 03-19-2022 15:50 antspyx-0.3.2.dist-info/LICENSE
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I can't seem to attach a wheel (or a zip of a wheel) to this post, so here is a link: http://files.aga3.xyz/antspyx-0.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
I defer to @stnava for pushing this along but thanks for this @aganders3 .
hi - thx for this - I would like to see more evidence that this strategy leads to wheels that are truly portable. unfortunately, I don't have time right now to check that myself - hopefully next week.
I've tested this working in our environment but unfortunately the large uncompressed size negates the benefit on our end (installed in a Docker image). I'm going to keep investing as time allows because the huge compression ratio does not seem right.
Okay I spent another chunk of time on this today and I think the large inflated size comes from some issue in patchelf which is used by auditwheel. I created https://github.com/pypa/auditwheel/pull/376 which at least mitigates the issue, as I'm not sure if or when the root cause will (or can) be fixed in patchelf.
In any case here is the link to the version I am using internally; this wheel is now ~50 MB compressed and ~200 MB uncompressed: http://files.aga3.xyz/antspyx-0.3.2%2Bhri.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Hopefully this turns out to be as portable as your current wheels and can benefit all the ANTsPy users!