getSpatialData
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Install fails with "Error...symbol not found"
I'm trying to install the package on Debian 10:
> sessionInfo()
R version 3.5.2 (2018-12-20)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 10 (buster)
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3
LAPACK: /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_IL.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_IL.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_IL.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
and I then get many lines with errors when the installation tries to load the package:
> devtools::install_github("16EAGLE/getSpatialData")
Downloading GitHub repo 16EAGLE/getSpatialData@master
✔ checking for file ‘/tmp/RtmpyjMxMl/remotes662a762d7549/16EAGLE-getSpatialData-2525bf2/DESCRIPTION’ ...
─ preparing ‘getSpatialData’:
✔ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ looking to see if a ‘data/datalist’ file should be added
─ building ‘getSpatialData_0.0.4.tar.gz’
Installing package into ‘/home/micha/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
* installing *source* package ‘getSpatialData’ ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error relocating /usr/lib/x86_64-linux-gnu/libsqlite3.so.0: __memcpy_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libsqlite3.so.0: __memset_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libsqlite3.so.0: fcntl64: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libexpat.so.1: __fprintf_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libexpat.so.1: getrandom: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libopenjp2.so.7: __vsnprintf_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libopenjp2.so.7: __fprintf_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libopenjp2.so.7: __sprintf_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libgeotiff.so.2: __strcat_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libgeotiff.so.2: __vfprintf_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libgeotiff.so.2: __fprintf_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libgeotiff.so.2: __vsprintf_chk: symbol not found
Error relocating /usr/lib/x86_64-linux-gnu/libgeotiff.so.2: __sprintf_chk: symbol not found
Any suggestions how to overcome this?
Sorry for the late reply. I am not sure what the reasons are for these errors. Can you try installing the most recent version (0.1.0) and report me if that worked?